Computational Biophysics – MCQs

50 Score: 0 Attempted: 0/50 Subscribe
1. Computational biophysics primarily involves:





2. Molecular dynamics (MD) simulations are based on:





3. In computational biophysics, force fields describe:





4. A common software used for molecular dynamics simulations is:





5. The primary purpose of Monte Carlo simulations in biophysics is:





6. Quantum mechanics is essential in computational biophysics for studying:





7. Protein folding simulations help in understanding:





8. Coarse-grained simulations are used to:





9. All-atom simulations represent:





10. The time step in molecular dynamics simulations is usually in the range of:





11. The Lennard-Jones potential is commonly used to describe:





12. Root Mean Square Deviation (RMSD) in simulations is used to measure:





13. Normal mode analysis (NMA) is applied to study:





14. Molecular docking is used to predict:





15. The Poisson–Boltzmann equation is applied in computational biophysics to:





16. A widely used visualization tool for molecular simulations is:





17. The Metropolis algorithm is associated with:





18. Enhanced sampling methods in molecular simulations are developed to:





19. Brownian dynamics simulations are particularly useful for studying:





20. The main limitation of molecular dynamics is:





21. Hybrid QM/MM methods combine:





22. Computational biophysics is applied in drug discovery through:





23. A Markov state model (MSM) is useful for:





24. Replica exchange molecular dynamics (REMD) is a technique to:





25. Free energy perturbation (FEP) methods are used to:





26. Molecular dynamics trajectories are analyzed to study:





27. Energy minimization in simulations is performed to:





28. Protein–ligand binding affinity prediction relies on:





29. Machine learning in computational biophysics is applied to:





30. A Ramachandran plot provides information on:





31. The particle-mesh Ewald (PME) method is used for:





32. In computational protein dynamics, hydrogen bonds are monitored to:





33. Umbrella sampling is a technique used in:





34. Computational biophysics contributes to structural biology by:





35. The advantage of coarse-grained models is:





36. In computational biophysics, PCA (Principal Component Analysis) is used to:





37. A transition pathway of a protein can be studied using:





38. Computational electrophysiology simulations model:





39. Force field parameters are generally derived from:





40. Water models in simulations (e.g., TIP3P) are used to:





41. The Boltzmann distribution is fundamental in simulations for:





42. Protein–DNA interactions can be studied by:





43. Which algorithm is commonly used for time integration in molecular dynamics?





44. In biomolecular simulations, periodic boundary conditions are used to:





45. Computational biophysics helps in personalized medicine by:





46. The generalized Born model is used to approximate:





47. The time complexity of molecular dynamics simulations increases with:





48. GPU acceleration in computational biophysics is used to:





49. Elastic network models (ENM) are used to study:





50. Computational biophysics integrates: